Discover and read the best of Twitter Threads about #digitalpathology
Most recents (5)
With #USCAP2023 approaching, I have been conversing with @MSKPathology fellows about how to make the most of the meeting
Thought I would share some ideas here (thread🧵):
1. Large professional mtgs can be overwhelming & IMO, require a strategy in order to maximize gains
👇🏻 1/
Thought I would share some ideas here (thread🧵):
1. Large professional mtgs can be overwhelming & IMO, require a strategy in order to maximize gains
👇🏻 1/
2. Select sessions to attend:
MAKE A PLAN! @TheUSCAP
Review the conference website: 2023am.uscap.org
Select "Schedule" under the "Program" drop-down menu for a day by day, hour by hour view #USCAP2023 👇🏻 2/
MAKE A PLAN! @TheUSCAP
Review the conference website: 2023am.uscap.org
Select "Schedule" under the "Program" drop-down menu for a day by day, hour by hour view #USCAP2023 👇🏻 2/
3. Focus, Focus, Focus
Too many concurrent sessions at #USCAP2023 to randomly select
Residents: make ACTIVE choices - is there a subspecialty I'm considering fellowship in? is there a technology (#molecpath, #digitalpathology, #AI) that I want to learn more about? 👇🏻 3/
Too many concurrent sessions at #USCAP2023 to randomly select
Residents: make ACTIVE choices - is there a subspecialty I'm considering fellowship in? is there a technology (#molecpath, #digitalpathology, #AI) that I want to learn more about? 👇🏻 3/
QuPath v0.4.0 is now available!
Download it at qupath.github.io
#opensource #bioimageanalysis #digitalpathology #java #javafx
Download it at qupath.github.io
#opensource #bioimageanalysis #digitalpathology #java #javafx
There are so many new things that it'll take some days to describe even just the main ones.
For now, I'll start by mentioning a few of the user interface improvements.
QuPath v0.4.0 is more welcoming than previous versions... and a bit more stylish.
For now, I'll start by mentioning a few of the user interface improvements.
QuPath v0.4.0 is more welcoming than previous versions... and a bit more stylish.
In fact, you can even style it in your own unique way if you really want to, thanks to #javafx & css (ideally in a nicer way than in my screenshots).
qupath.readthedocs.io/en/0.4/docs/re…
qupath.readthedocs.io/en/0.4/docs/re…
1/14 🆕 🚨Accelerated article on #breastcancer just out in @nature! #bcsm
We asked:
1️⃣ What drives response to #chemotherapy in #breast #cancer❓
2️⃣ Can we use #machinelearning to predict response to chemotherapy❓
Link: nature.com/articles/s4158…
A 🧵👇👇👇 @OncoAlert
We asked:
1️⃣ What drives response to #chemotherapy in #breast #cancer❓
2️⃣ Can we use #machinelearning to predict response to chemotherapy❓
Link: nature.com/articles/s4158…
A 🧵👇👇👇 @OncoAlert
2/14 We are unable to #predict #response to treatment in clinic…
✅Good response ➡️treatment very effective ➡️better survival
❌Poorer response ➡️treatment less effective ➡️worse survival
Being able to forecast response would be a landmark advance!
✅Good response ➡️treatment very effective ➡️better survival
❌Poorer response ➡️treatment less effective ➡️worse survival
Being able to forecast response would be a landmark advance!
3/14 We ran a study in women with #breastcancer @CUH_NHS+@CRUK_CI:
1️⃣who had a #cancer biopsy (which we analysed)
2️⃣received 18 weeks of chemo+/-targeted therapy
3️⃣had surgery (and we measured how much cancer remained)
We associated PRE-therapy profiles↔️POST-therapy response👇
1️⃣who had a #cancer biopsy (which we analysed)
2️⃣received 18 weeks of chemo+/-targeted therapy
3️⃣had surgery (and we measured how much cancer remained)
We associated PRE-therapy profiles↔️POST-therapy response👇
@QuPath #tweetorial part 2... this time it's (almost) all annotations. 1/20
#bioimageanalysis #digitalpathology #opensource #javafx
#bioimageanalysis #digitalpathology #opensource #javafx
I say 'almost all', because I need to mention the command list early: with 'Ctrl + L' you get a searchable list of everything in the menus.
Having told you that, I can now ignore the menus & focus on shortcuts - safe in the knowledge you can find things if you need them. 2/20
Having told you that, I can now ignore the menus & focus on shortcuts - safe in the knowledge you can find things if you need them. 2/20
(If you *really* like the command list, you can turn it into a command bar and give it a special place at the top of the viewer... but I probably wouldn't unless I broke my 'L' key.) 3/20
Time for a quick introduction to @QuPath in tweetorial form.
First up: a little background on how QuPath differs from other great #opensource tools for #bioimageanalysis like @FijiSc & @CellProfiler - and how to get started viewing images. 1/12
qupath.github.io
First up: a little background on how QuPath differs from other great #opensource tools for #bioimageanalysis like @FijiSc & @CellProfiler - and how to get started viewing images. 1/12
qupath.github.io
QuPath's most obvious distinguishing feature is that it handles whole slide images. These are ultra-large 2D images, often up to 50 GB in size.
Whole slide images are everywhere in #digitalpathology & increasingly common in research. 2/12
Whole slide images are everywhere in #digitalpathology & increasingly common in research. 2/12
A single whole slide image can be more than 200k x 100k pixels in size & contain a huge amount of information that matters to researchers & clinicians.
The trouble is trying to wring that information out of billions of pixels. 3/12
The trouble is trying to wring that information out of billions of pixels. 3/12
